CDS

Accession Number TCMCG007C04057
gbkey CDS
Protein Id XP_009122554.1
Location complement(join(19622270..19622758,19622841..19623104,19623183..19623242,19623333..19623641,19623732..19623880,19623988..19624057,19624196..19624399,19624596..19624790,19624880..19625152,19625230..19625400,19625474..19625604,19625683..19625842,19625934..19626122,19626201..19626296,19626373..19626606,19626687..19626774,19626849..19627003,19627200..19627433))
Gene LOC103847246
GeneID 103847246
Organism Brassica rapa

Protein

Length 1156aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009124306.3
Definition DExH-box ATP-dependent RNA helicase DExH3 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category A
Description RNA helicase
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K14442        [VIEW IN KEGG]
EC 3.6.4.13        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03018        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000976        [VIEW IN EMBL-EBI]
GO:0000977        [VIEW IN EMBL-EBI]
GO:0000978        [VIEW IN EMBL-EBI]
GO:0000987        [VIEW IN EMBL-EBI]
GO:0001012        [VIEW IN EMBL-EBI]
GO:0001047        [VIEW IN EMBL-EBI]
GO:0001067        [VIEW IN EMBL-EBI]
GO:0001503        [VIEW IN EMBL-EBI]
GO:0001817        [VIEW IN EMBL-EBI]
GO:0001819        [VIEW IN EMBL-EBI]
GO:0002151        [VIEW IN EMBL-EBI]
GO:0002791        [VIEW IN EMBL-EBI]
GO:0002793        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003697        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003724        [VIEW IN EMBL-EBI]
GO:0003725        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004004        [VIEW IN EMBL-EBI]
GO:0004386        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008026        [VIEW IN EMBL-EBI]
GO:0008094        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008186        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009894        [VIEW IN EMBL-EBI]
GO:0009895        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010501        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0010638        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016462        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016817        [VIEW IN EMBL-EBI]
GO:0016818        [VIEW IN EMBL-EBI]
GO:0016887        [VIEW IN EMBL-EBI]
GO:0017111        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031324        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031329        [VIEW IN EMBL-EBI]
GO:0031330        [VIEW IN EMBL-EBI]
GO:0032204        [VIEW IN EMBL-EBI]
GO:0032206        [VIEW IN EMBL-EBI]
GO:0032479        [VIEW IN EMBL-EBI]
GO:0032481        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032647        [VIEW IN EMBL-EBI]
GO:0032727        [VIEW IN EMBL-EBI]
GO:0032879        [VIEW IN EMBL-EBI]
GO:0032880        [VIEW IN EMBL-EBI]
GO:0033043        [VIEW IN EMBL-EBI]
GO:0033044        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042623        [VIEW IN EMBL-EBI]
GO:0042826        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043330        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0043487        [VIEW IN EMBL-EBI]
GO:0043489        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044212        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045934        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045944        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048523        [VIEW IN EMBL-EBI]
GO:0050707        [VIEW IN EMBL-EBI]
GO:0050708        [VIEW IN EMBL-EBI]
GO:0050714        [VIEW IN EMBL-EBI]
GO:0050715        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051046        [VIEW IN EMBL-EBI]
GO:0051047        [VIEW IN EMBL-EBI]
GO:0051049        [VIEW IN EMBL-EBI]
GO:0051050        [VIEW IN EMBL-EBI]
GO:0051052        [VIEW IN EMBL-EBI]
GO:0051054        [VIEW IN EMBL-EBI]
GO:0051128        [VIEW IN EMBL-EBI]
GO:0051130        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051172        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051222        [VIEW IN EMBL-EBI]
GO:0051223        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0051240        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051253        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051880        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070034        [VIEW IN EMBL-EBI]
GO:0070035        [VIEW IN EMBL-EBI]
GO:0070201        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090087        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090669        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1902369        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1902739        [VIEW IN EMBL-EBI]
GO:1902741        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1903530        [VIEW IN EMBL-EBI]
GO:1903532        [VIEW IN EMBL-EBI]
GO:1904951        [VIEW IN EMBL-EBI]
GO:1990837        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]
GO:2001252        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCGTTTCACCAAACGAATAAGCTTCTTCCTGTGGCAGGCCACCAAGCTCCCCACTCGCTCTCTACCGAGAAACCCATCTTTATGCAGGTCTTATCATATCGTTGGTGCTCCGATCTCTAGTGGTGATGTTGTCAAAGGTTTGTCATACGGCCAGATACGTCGTCGTTTCATCGGGTACACTGCGGAACAGTTCTCTGATGATGAGTACGAGTGTGAATTCGAGGAACATAAGGCTTCATCTTCTGTGGCCAATGTTGATGAGTGGAAATGGAAGTTAGGGATTCTGTTGGCTAATGATAGCGAACGAGAGATTGTTTCTAGAGACAAAAGAGACCGAAGGGATTATGAGCAGATCTCAAATCTTGCCAAGAGAATGGGACTCTACAGTGAGATCTATGGAAAAGTGGTTGTTGCAAGCAAGGTTCCTCTTCCCAACTACAGGCCAGATTTGGATGATAAGCGACCACAACGGGAGGTGGTACTTCCTTTGAGTTTGCAGAGAAGGGTAGAGGGACTACTCCAGGAACACCTTGATAGACAGCAGCTGAACTCAGGAAAGGCTAATGAAAGTGAAGCTGATTCTCAGCCTCCTAAGCAGACTGAAGAGCTTCCTGATGAAAGCTCTGATGCGTTTCTCGATGGTTCTGTTATGGAGAAGGTGCTTCAGAGGAGGAGTATGCGGATGCGCAATATGCAGAGAGCCTGGCAGGAATCACCTGAGGGGCGTACAATGCTGGAATTCCGGAAATCTTTGCCTTCATTCAAGGACAAGGAAAGACTTCTTCAAGCTATTGCTCGGAACCAGGTAATAGTGGTATCTGGGGAGACTGGGTGTGGTAAGACAACTCAACTGCCACAGTACATTTTGGAATCGGAGATAGAGTCTGGTCGAGGAGCGTTCTGCAACATCATTTGTACACAACCTCGGAGGATATCTGCCATGGCAGTTGCAGAAAGAGTGTCTGCTGAGAGAGGAGAACCTCTTGGTGAAACGGTTGGGTTTAAAGTTCGTCTAGAAGGAATGAGAGGAAAGAATACTCAACTTCTGTTTTGTACAAGTGGTATTCTACTCAGACGTCTCCTTAGTGATCGCAATTTGAATGGCATAACACATGTTTTTGTTGACGAGATTCACGAAAGGGGAATGAACGAAGATTTCTTGATAATAGTGTTGAAGGAGCTTCTTCCACGGCGTCCGGATCTGAGATTGGTTCTCATGAGTGCCACTTTGAATGCTGAACTCTTTTCTAACTATTTTGGAGGAGCGCCTACAATTCACATTCCAGGCTTCACACATCCAGTGAAGGCACATTTTCTGGAGGATGTACTCGAAATGACGGGATATAAGTTGACCTCTTTCAACCAAGTTGATGATTATGGCCAAGAAAAGACTTGGAAAACGCAAAAGCAGTTGATGCCACGCAAAAGGAAAAACCAGATCACTTCTCTTGTTGAGGAAGCTCTTAGCAAGTCAACTTTTGAAAGTTATAGCTCTAGGACTCGTGATTCACTCTCGTCTTGGATGCCTGATTGCGTAGGATTTAATCTTATTGAGGCCGTTCTCTGTCACATATGCCGCAAAGAACGCCCGGGAGCTGTACTAGTGTTTTTGACAGGATGGGATGATATTAGCTCCCTGAGGGACCAAATCAAAGCACATCCTCTCCTCGGTGATCCCAATAGAGTCTTGCTGTTGATGTGCCACGGTTCAATGGCAACTGCTGAACAGAGACTCATTTTCGAGAGAGCACCTCCTAATATTCGCAAAATTGTACTTGCTACAAACATGGCAGAAGCTAGTATTACAATAAACGATGTAGTTTTTGTGGTTGACTGTGGAAAGGCAAAAGAGACCACCTATGATGCTTTGAACAATACGCCTTGTTTGCTACCCTCATGGATATCTCAAGCTTCTGCTAGACAGAGAAGGGGCAGAGCTGGTCGTCTGCTTCCGGGAGAATGCTATCACCTGTACCCCAAATGCGTGTATGAAGCTTTTTCGGAGTATCAACTTCCTGAACTTCTGAGAACTCCTTTGAACTCTCTCTGCCTGCAAATTAAAAGTCTTCAGGTTGAAAGCATTGCCGGGTTCTTGTCAGCTGCACTTCAGGCTCCGGAGCCTTTGACCGTTCAAAATGCTATTGGATTCCTGAAAATGATTGGAGCACTGGATGAGAAAGAAAATCTGACGGATCTTGGAAAACTCTTATCGATTCTTCCAGTTGATCCCAAGCTGGGGAAAATGCTCATAATGGGTGCCATCTTCCACTGCTTTGATCCTATCCTGACAATTGTATCAGGGCTCAGTGTCAGAGATCCTTTCCTTCTACCTCAAGAGAAAAAGGACTTAGCTTTATCAGCCAAGTTGAGATTCTCAGCTAAAGACTACAGTGACCATATGGCACTAGTTCGTGCCTTCGAAGGGTGGAAAAATGCTGAAAGAGAAGGATCGGCTTATGAGTACTGTTGGAGGAACTTTCTGTCAGCTCAGACGCTTCAGGCGATACATTCTCTGAGGAAGCAGTTCAACTATATCCTGAAAGAAGCTGGCTTAGTACACGATGATTCAGCTCTCAACAACAAGCTGAGTCACAATCAGTCTCTTGTTCGCGCTGTCATTTGCTCTGGCTTATTCCCCGGGATAGCATCTGTTGTGCATAGAGAGACTTCCATGTCGTTCAAGACAATGGATGATGGCCAAGTATCACTATATGCGAACTCTGTTAATTCGAGGTTCCCGACGATTCCATACCCTTGGCTAGTCTTTGGAGAGAAAGTGAAGGTCAATGCAGTGCTCATAAGAGACTCCACCGGTGTCCCTGATTCCAGTTTGATCCTTTTTGGTGGTGCACTGAGCACCGGAGTACAGGTGGGACATCTAAAAATGCTTGACGGGTACATTGACTTCTTCATGGATCCAAATTTGGCAGACTCCTACGTGAAGCTGAAGGAAGAACTCAACAAGCTTCTTCAGAAGAAGCTTGAAGATCCAAGCGTGGACATCCACAAAGAAGGCAAGTACCTGATGCTTGCAGTTCAAGAACTCGTCGCTGGAGACCAATGCGAAGGGAGATTCGTATTCGGCCGCGACACAAAGAGGCCAAGCCAACCGCAATTAGCAGGAGAGAACAACAAACTCTCCAAAGACGGGACAAACCCGAAGAGTCTCCTTCAGACGCTTTTAATGAGAGCTGGACACTCGCCTCCAAAGTACAAGACCAAACATCTGAAGACGAACGAGTTTAGAGCGCTTGTGGAGTTCAAAGGGATGCAGTTCGTTGGGAAGCCTCAGAGGAACAAAACGCTCGCTGAGAAAGATGCAGCTGTTGAGGCCTTGGCTTGGTTGACTCATACATCTGATAATAGTACTGACCAGTACAGTGGAGACGCGGATTCTCCACCTGATGTTACTGATAACATGCTTAAACTCCTTGGTGGAAAACGGCGCAGGCGGTCCAAAGGCAAGTAG
Protein:  
MRFTKRISFFLWQATKLPTRSLPRNPSLCRSYHIVGAPISSGDVVKGLSYGQIRRRFIGYTAEQFSDDEYECEFEEHKASSSVANVDEWKWKLGILLANDSEREIVSRDKRDRRDYEQISNLAKRMGLYSEIYGKVVVASKVPLPNYRPDLDDKRPQREVVLPLSLQRRVEGLLQEHLDRQQLNSGKANESEADSQPPKQTEELPDESSDAFLDGSVMEKVLQRRSMRMRNMQRAWQESPEGRTMLEFRKSLPSFKDKERLLQAIARNQVIVVSGETGCGKTTQLPQYILESEIESGRGAFCNIICTQPRRISAMAVAERVSAERGEPLGETVGFKVRLEGMRGKNTQLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLIIVLKELLPRRPDLRLVLMSATLNAELFSNYFGGAPTIHIPGFTHPVKAHFLEDVLEMTGYKLTSFNQVDDYGQEKTWKTQKQLMPRKRKNQITSLVEEALSKSTFESYSSRTRDSLSSWMPDCVGFNLIEAVLCHICRKERPGAVLVFLTGWDDISSLRDQIKAHPLLGDPNRVLLLMCHGSMATAEQRLIFERAPPNIRKIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRLLPGECYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIAGFLSAALQAPEPLTVQNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFHCFDPILTIVSGLSVRDPFLLPQEKKDLALSAKLRFSAKDYSDHMALVRAFEGWKNAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFNYILKEAGLVHDDSALNNKLSHNQSLVRAVICSGLFPGIASVVHRETSMSFKTMDDGQVSLYANSVNSRFPTIPYPWLVFGEKVKVNAVLIRDSTGVPDSSLILFGGALSTGVQVGHLKMLDGYIDFFMDPNLADSYVKLKEELNKLLQKKLEDPSVDIHKEGKYLMLAVQELVAGDQCEGRFVFGRDTKRPSQPQLAGENNKLSKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPQRNKTLAEKDAAVEALAWLTHTSDNSTDQYSGDADSPPDVTDNMLKLLGGKRRRRSKGK